Scaffold Ga0062389_100364977

Overview

Basic Information

• Taxon OID: 3300004092
• Scaffold ID: Ga0062389_100364977
• Source Dataset Name: Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1547
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008041	Metagenome / Metatranscriptome	340	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062389_1003649772	F008041	AGG	MQGRLFQAEEFGTVTQNTATIIFICPYGTPIEKVRFAIRRFLKEGYHVLAYQTTVAVFTEADPMILPELISQVREDIRSRIAKLTSEGVTEFGFFGSSLGSFILYNCVGREIPELRWGVFNTGGNIARGLWNMTTLRQAHIARGWSLPRLEEAWAELQRPDFGRLDGCRFVFASSRRDDIAPMSNISEYLEPMLRAGADVSVREVPAIGHRTTVIAGLWKGPQLVRMVRAVRPI*